Documentation

Comprehensive guides and reference materials for the Mycology Research Pipeline

Documentation
Overview PubMed Integration CMID Research Kit Sample Management Compound Analysis Batch Processing API Reference Deployment Guide
Documentation Overview

Mycology Research Pipeline Documentation

Welcome to the official documentation for the Mycology Research Pipeline, a comprehensive platform for advanced mycological research, data processing, and scientific exploration.

This documentation provides detailed information on how to use the various features of the platform, from sample management to advanced data analysis and integration with external resources like PubMed.

Version: 1.0 (MVP Release)

Key Components

Sample Management

Tools for cataloging, tracking, and managing mycological samples, including species information, collection data, and custom metadata.

Learn More
Compound Analysis

Tools for analyzing and visualizing compounds found in mycological samples, including chemical properties, bioactivity indices, and molecular structures.

Learn More
PubMed Integration

Integration with the PubMed database for accessing and managing scientific literature related to mycological research and medicinal mushrooms.

Learn More
Batch Processing

Tools for processing large datasets of mycological samples and compounds, with support for automated analysis and reporting.

Learn More
Data Visualization

Tools for visualizing research data, including interactive charts, graphs, and molecular structure viewers.

Learn More
API Reference

Comprehensive API documentation for developers integrating with the Mycology Research Pipeline programmatically.

Learn More

Getting Started

To get started with the Mycology Research Pipeline, we recommend these initial steps:

  1. Explore the Dashboard to get an overview of the system
  2. Add your first mycological Sample
  3. Run an Analysis on your sample
  4. Explore scientific literature using the Literature page
  5. Set up Batch Processing for larger datasets

System Requirements

  • Web browser: Chrome, Firefox, Safari, or Edge (latest versions)
  • Internet connection: Required for PubMed integration and external data access
  • Screen resolution: Minimum 1280x720 recommended

Support

For technical support, please contact:

Developer Resources

For developers interested in extending or integrating with the Mycology Research Pipeline: